Articles | Volume 63, issue 2
https://doi.org/10.5194/aab-63-377-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/aab-63-377-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Expression profiles and polymorphic identification of the ACSL1 gene and their association with body size traits in Dezhou donkeys
Zhenyu Lai
Key Laboratory of Animal Genetics, Breeding and Reproduction of
Shaanxi Province, College of Animal Science and Technology, Northwest A&F
University, Yangling, Shaanxi Province, 712100, China
Fei Wu
Key Laboratory of Animal Genetics, Breeding and Reproduction of
Shaanxi Province, College of Animal Science and Technology, Northwest A&F
University, Yangling, Shaanxi Province, 712100, China
Zihui Zhou
Key Laboratory of Animal Genetics, Breeding and Reproduction of
Shaanxi Province, College of Animal Science and Technology, Northwest A&F
University, Yangling, Shaanxi Province, 712100, China
Mei Li
Key Laboratory of Animal Genetics, Breeding and Reproduction of
Shaanxi Province, College of Animal Science and Technology, Northwest A&F
University, Yangling, Shaanxi Province, 712100, China
Yuan Gao
Key Laboratory of Animal Genetics, Breeding and Reproduction of
Shaanxi Province, College of Animal Science and Technology, Northwest A&F
University, Yangling, Shaanxi Province, 712100, China
Guijun Yin
National Engineering Research Center for Gelatin-based Traditional Chinese Medicine, Dong-E-E-Jiao Co. Ltd., No.78, E-jiao Street, Done-E Country, Liaocheng, Shandong Province,
252201, China
Jie Yu
National Engineering Research Center for Gelatin-based Traditional Chinese Medicine, Dong-E-E-Jiao Co. Ltd., No.78, E-jiao Street, Done-E Country, Liaocheng, Shandong Province,
252201, China
Chuzhao Lei
Key Laboratory of Animal Genetics, Breeding and Reproduction of
Shaanxi Province, College of Animal Science and Technology, Northwest A&F
University, Yangling, Shaanxi Province, 712100, China
Ruihua Dang
CORRESPONDING AUTHOR
Key Laboratory of Animal Genetics, Breeding and Reproduction of
Shaanxi Province, College of Animal Science and Technology, Northwest A&F
University, Yangling, Shaanxi Province, 712100, China
Related authors
No articles found.
Danyang Zhang, Jiawei Xu, Peng Yang, Yifan Wen, Hua He, Jiaxiao Li, Juntong Liang, Yining Zheng, Zijing Zhang, Xianwei Wang, Xiang Yu, Eryao Wang, Chuzhao Lei, Hong Chen, and Yongzhen Huang
Arch. Anim. Breed., 63, 31–37, https://doi.org/10.5194/aab-63-31-2020, https://doi.org/10.5194/aab-63-31-2020, 2020
Mingli Wu, Shipeng Li, Guoliang Zhang, Yingzhi Fan, Yuan Gao, Yongzhen Huang, Xianyong Lan, Chuzhao Lei, Yun Ma, and Ruihua Dang
Arch. Anim. Breed., 62, 465–475, https://doi.org/10.5194/aab-62-465-2019, https://doi.org/10.5194/aab-62-465-2019, 2019
Short summary
Short summary
Four indels were identified by sequencing with DNA pool. Association analysis showed that three of them were associated with growth traits (P<0.05). Our results demonstrated that the polymorphisms in bovine MSRB3 gene were significantly associated with growth traits, which could be candidate loci for marker-assisted selection (MAS) in cattle breeding. These molecular markers are expected to accelerate the process of molecular breeding.
Lulan Zeng, Ruihua Dang, Hong Dong, Fangyu Li, Hong Chen, and Chuzhao Lei
Arch. Anim. Breed., 62, 181–187, https://doi.org/10.5194/aab-62-181-2019, https://doi.org/10.5194/aab-62-181-2019, 2019
Short summary
Short summary
Donkeys are an important livestock in China for their nourishment and medical values. Indigenous donkey populations of China retain relatively abundant genetic diversity and Chinese donkeys were grouped into two lineages, which correspond to their geographic distribution and breeding history.
Yi-Lei Ma, Yi-Fan Wen, Xiu-Kai Cao, Jie Cheng, Yong-Zhen Huang, Yun Ma, Lin-Yong Hu, Chu-Zhao Lei, Xing-Lei Qi, Hui Cao, and Hong Chen
Arch. Anim. Breed., 62, 171–179, https://doi.org/10.5194/aab-62-171-2019, https://doi.org/10.5194/aab-62-171-2019, 2019
Short summary
Short summary
We used lots of Chinese cattle to detect the specific regional variation in the IGF1R genome. It was found that this variation in the Chinese cattle population is related to the weight and height of the cattle. There is a lot of genetic information in this mutated region, which may be the cause affecting the traits. Our study provided a preliminary result for the functional role of the IGF1R variation in larger populations and for an important marker in cattle breeding programs.
Haiyu Zhao, Sihuan Zhang, Xianfeng Wu, Chuanying Pan, Xiangchen Li, Chuzhao Lei, Hong Chen, and Xianyong Lan
Arch. Anim. Breed., 62, 59–68, https://doi.org/10.5194/aab-62-59-2019, https://doi.org/10.5194/aab-62-59-2019, 2019
Short summary
Short summary
This study analyzed the DNA methylation profile of the PITX1 gene and its relevance to lactation performance in goats. The methylation rates of the overall CpG island and the 3rd and 12th CpG-dinucleotide loci in blood were significantly associated with average milk yield. The overall methylation rates of the CpG island in mammary gland tissue from dry and lactation periods showed a significant difference. These results could be used as potential epigenetic markers for lactation performance.
Haoyuan Han, Xin Zhang, Xiaocheng Zhao, Xiaoting Xia, Chuzhao Lei, and Ruihua Dang
Arch. Anim. Breed., 61, 263–270, https://doi.org/10.5194/aab-61-263-2018, https://doi.org/10.5194/aab-61-263-2018, 2018
Short summary
Short summary
The occurrence of copy number variations (CNVs) has been confirmed on the Y
chromosome in horses. However, the copy numbers (CNs) of Equus caballus Y
chromosome (ECAY) genes are largely unknown. This study aimed to demonstrate the copy number variations of Y chromosome genes in horses. Therefore, the quantitative real-time polymerase chain reaction (qPCR) method was applied to measure the CNVs of eight Y chromosome specific genes from 14 different Chinese horse breeds.
Haidong Zhao, Mingli Wu, Shuhui Wang, Xiaohui Yu, Ze Li, Ruihua Dang, and Xiuzhu Sun
Arch. Anim. Breed., 61, 71–78, https://doi.org/10.5194/aab-61-71-2018, https://doi.org/10.5194/aab-61-71-2018, 2018
Short summary
Short summary
The androgen receptor (AR) plays the vital role of a bridge on the function of the androgen and has sexual size dimorphism. For this reason, the objective of this study was to explore the novel indel variants within the cattle AR gene and to detect a novel 24 bp indel within the AR gene. It significantly affected growth traits, suggesting that this indel may be a useful DNA marker for the elimination or selection of excellent individuals for cattle breeding.
Haoyuan Han, Xiaocheng Zhao, Xiaoting Xia, Hong Chen, Chuzhao Lei, and Ruihua Dang
Arch. Anim. Breed., 60, 391–397, https://doi.org/10.5194/aab-60-391-2017, https://doi.org/10.5194/aab-60-391-2017, 2017
Han Xu, Sihuan Zhang, Xiaoyan Zhang, Ruihua Dang, Chuzhao Lei, Hong Chen, and Xianyong Lan
Arch. Anim. Breed., 60, 285–296, https://doi.org/10.5194/aab-60-285-2017, https://doi.org/10.5194/aab-60-285-2017, 2017
Short summary
Short summary
This work identified SNPs in the growth- and development-related ATBF1 gene in cattle. Five novel SNPs were found in 644 cattle. The results found that SNP1, SNP2, and SNP3 and the combined genotypes SNP1–SNP3, SNP1–SNP4 and SNP2–SNP5 were significantly associated with growth traits in Qinchuan and Jinnan cattle. These findings indicate that the bovine ATBF1 gene has marked effects on growth traits, and the growth-trait-related loci can be used as DNA markers for MAS breeding programs in cattle.
Yunyun Jin, Hanfang Cai, Jiming Liu, Fengpeng Lin, Xinglei Qi, Yueyu Bai, Chuzhao Lei, Hong Chen, and Xianyong Lan
Arch. Anim. Breed., 59, 469–476, https://doi.org/10.5194/aab-59-469-2016, https://doi.org/10.5194/aab-59-469-2016, 2016
Short summary
Short summary
Paired box 7 (Pax7) gene, a member of the paired box gene family, plays a critical role in animal growth and muscle development, especially in cell proliferation and self-renewal. In our study, the 10 bp duplication indel was detected in the promoter region within bovine Pax7 gene as well as its association with growth traits. This indel was significantly associated with the body weight in Xianan cattle, the body height in Jinjiang cattle, and the hip width in Pi'nan cattle.
Meng Zhang, Chuanying Pan, Qin Lin, Shenrong Hu, Ruihua Dang, Chuzhao Lei, Hong Chen, and Xianyong Lan
Arch. Anim. Breed., 59, 351–361, https://doi.org/10.5194/aab-59-351-2016, https://doi.org/10.5194/aab-59-351-2016, 2016
Short summary
Short summary
Nanog is an important pluripotent transcription regulator, and its overexpression leads to a high expression of the growth and differentiation factor 3, affecting animal growth traits. The aim of this study was to explore the genetic variations within the Nanog gene and their effects on phenotypic traits in cattle. Six novel exonic single nucleotide polymorphisms were found in six cattle breeds and indicated that Nanog could be a candidate gene for marker-assisted selection in cattle breeding.
H. Cai, Z. Wang, X. Lan, Y. Xu, H. Chen, and C. Lei
Arch. Anim. Breed., 59, 91–95, https://doi.org/10.5194/aab-59-91-2016, https://doi.org/10.5194/aab-59-91-2016, 2016
Short summary
Short summary
In this research, the effects of two indel loci of the visfatin gene on mRNA expression levels were studied. The results imply that the expression levels of bovine visfatin vary with age and its indels might be putative variants mediating the expression of the bovine visfatin gene. This study provides useful information for further functional studies of bovine visfatin.
Related subject area
Subject: DNA markers and gene expressions | Animal: Other
Characterization of different adipose depots in fattened buffalo: histological features and expression profiling of adipocyte markers
Genetic diversity of κ-casein (CSN3) and lactoferrin (LTF) genes in the endangered Turkish donkey (Equus asinus) populations
Evaluation of chromosomal instability in somatic cells of farmed foxes
Invited review: Genome-wide association analysis for quantitative traits in livestock – a selective review of statistical models and experimental designs
Association of VLDLR haplotypes with abdominal fat trait in ducks
Jieping Huang, Xiaoyan Liu, Xue Feng, Mingming Zhang, Kaixing Qu, Jianyong Liu, Xuefeng Wei, Bizhi Huang, and Yun Ma
Arch. Anim. Breed., 63, 61–67, https://doi.org/10.5194/aab-63-61-2020, https://doi.org/10.5194/aab-63-61-2020, 2020
Short summary
Short summary
Adipose tissue (AT) is a multi-depot organ in mammals and is formed in specific locations to meet the requirements of organism development. There are two main regional AT depots: subcutaneous and visceral. AT from various depots differs in composition and function. Based on the function, AT depots can be further classified as white and brown AT. Revealing the composition feature of AT depots will provide valuable information for further research on the fat deposition patterns in buffalo.
Fulya Özdil, Hasan Bulut, and Raziye Işık
Arch. Anim. Breed., 62, 77–82, https://doi.org/10.5194/aab-62-77-2019, https://doi.org/10.5194/aab-62-77-2019, 2019
Short summary
Short summary
In this study, κ-casein (CSN3) and lactoferrin (LTF) genes were studied firstly in Turkish donkeys. PCR-RFLP and DNA sequencing of these gene regions were performed. CSN3 and the LTF gene had no enzyme recognition sites with PstI, DraII and MboI restriction enzymes in all of the studied samples. However, the LTF gene was only distinguished with EagI restriction enzyme and three genotypes were identified. The G allele was predominant in the LTF-EagI gene in the studied Turkish donkey populations.
Olga Szeleszczuk, Magdalena Gleindek, Anna Grzesiakowska, Marta Kuchta-Gładysz, and Agnieszka Otwinowska-Mindur
Arch. Anim. Breed., 61, 405–412, https://doi.org/10.5194/aab-61-405-2018, https://doi.org/10.5194/aab-61-405-2018, 2018
Short summary
Short summary
The micronucleus (MN) test is a common tool used to evaluate cellular genetic instability at the chromosomal level. To evaluate genetic material stability in selected Canidae species, the MN test was performed. The interspecific hybrids differed from the other fox species in MN percentage. The chromosome polymorphism had little effect on genetic material stability in the blue and silver fox cells and significantly increases chromosomal damages in interspecific hybrids somatic cells.
Markus Schmid and Jörn Bennewitz
Arch. Anim. Breed., 60, 335–346, https://doi.org/10.5194/aab-60-335-2017, https://doi.org/10.5194/aab-60-335-2017, 2017
Shifeng Pan, Cong Wang, Xuan Dong, Mingliang Chen, Hua Xing, and Tangjie Zhang
Arch. Anim. Breed., 60, 175–182, https://doi.org/10.5194/aab-60-175-2017, https://doi.org/10.5194/aab-60-175-2017, 2017
Cited articles
Botstein, D., White, R. L., Skolnick, M., and Davis, R. W.: Construction of a
genetic linkage map in man using restriction fragment length polymorphisms,
Am. J. Hum. Genet., 32, 314–331,
https://doi.org/10.1016/0165-1161(81)90274-0, 1980.
Cao, Y.: The cloning and expression of ACSL1 and its effect on fatty
content, Masteral dissertation, Jilin Agricultural University, China, 53 pp.,
2016.
Cao, Y., Jin, H. G., Yu, Y. Y., Zhang, L. C., and Cao, Y.: Effect of ACSL1 gene on
lipid metabolism of sheep, Chinese journal of veterinary, Science, 38,
824–827, https://doi.org/10.16303/j.cnki.1005-4545.2018.04.38, 2018.
Coleman, R. A., Lewin, T. M., and Muoio, D. M.: Physiological and nutritional
regulation of enzymes of triacylglycerol synthesis, Annu. Rev.
Nutr., 20, 77–103, https://doi.org/10.1146/annurev.nutr.20.1.77, 2000.
Coleman, R. A., Lewin, T. M., Van Horn, C. G., and Gonzalez-Baró, M. R.: Do
Long-Chain Acyl-CoA Synthetases Regulate Fatty Acid Entry into Synthetic
Versus Degradative Pathways, J. Nutr., 132, 2123–2126,
https://doi.org/10.1093/jn/132.8.2123, 2002.
Ellis, J. M., Li, L. O., Wu, P., Koves, T. R., Ilkayeva, O., Stevens, R. D.,
Watkins, S. M., Muoio, D. M., and Coleman, R. A.: Adipose Acyl-CoA Synthetase-1
Directs Fatty Acids toward β-Oxidation and Is Required for Cold
Thermogenesis, Cell Metab., 12, 53–64,
https://doi.org/10.1016/j.cmet.2010.05.012, 2010.
Fan, Y. Z.: The Study on Selection Signals of Five Chinese Donkey Breeds
Based on Whole Genome Resequencing, Masteral dissertation, Northwest A&F
University, China, 65 pp., 2019.
Fang, X., Lai, Z., Liu, J., Zhang, C., Li, S., Wu, F., Zhou, Z., Lei, C., and
Dang, R.: A Novel 13 bp Deletion within the NR6A1 Gene Is Significantly
Associated with Growth Traits in Donkeys, Animals, 9, 681,
https://doi.org/10.3390/ani9090681, 2019.
Gui, L., Jiang, B., Zhang, Y., and Zan, L.: Sequence variants in the bovine
silent information regulator 6, their linkage and their associations with
body measurements and carcass quality traits in Qinchuan cattle, Gene,
559, 16–21, 2015.
Han, L. Y.: A association analysis on the associated genes and growth traits
in Xinjiang brown cattle, Masteral dissertation, Ningxia University, China,
64 pp., 2017.
Horne, B. D. and Camp, N. J.: Principal component analysis for selection of
optimal SNP-sets that capture intragenic genetic variation, Genet. Epidemiol.,
26, 11–21, https://doi.org/10.1002/gepi.10292, 2004.
Hou, H. B.: Association Analysis of NCAPG, DCAF16, FAM184B, TBX3 Gene
Poiymorphisms and Early Growth Traits in Dezhou donkeys, Masteral
dissertation, Chinese Academy of Agricultural Sciences, China, 66 pp., 2019.
Huang, Y., He, H., Sun, J., Wang, J., Li, Z., Lan, X., Lei, C., Zhang, C.,
Zhang, E., Wang, J., and Chen, H.: Haplotype combination of SREBP-1c gene
sequence variants is associated with growth traits in cattle, Genome, 54,
507–516, https://doi.org/10.1139/g11-016, 2011.
Huang, Y., Wang, K., He, H., Shen, Q., Lei, C., Lan, X., Zhang, C., and Chen,
H.: Haplotype distribution in the GLI3 gene and their associations with
growth traits in cattle, Gene, 513, 141–146,
https://doi.org/10.1016/j.gene.2012.10.052, 2013.
Kristin, G. A., Leonid, K., and Mark, S.: Patterns of linkage disequilibrium in
the human genome, Nat. Rev. Genet., 3, 299–309,
https://doi.org/10.1038/nrg777, 2002.
Lewin, T. M.: Acyl-coa synthetase isoforms 1, 4, and 5 are present in
different subcellular membranes in rat liver and can be inhibited
independently, J. Biol. Chem., 276, 24674–24679,
https://doi.org/10.1074/jbc.M102036200, 2001.
Lewin, T. M., Van Horn, C. G., Krisans, S. K., and Coleman, R. A.: Rat liver
acyl-coa synthetase 4 is a peripheral-membrane protein located in two
distinct subcellular organelles, peroxisomes, and mitochondrial-associated
membrane, Arch. Biochem. Biophys., 404, 263–270,
https://doi.org/10.1016/s0003-9861(02)00247-3, 2002.
Li, Q. G.: Association Analysis of the Polymorphisms of Pig Long Chain Acyl
Coenzyme A Synthetase 1 Gene with Backfat Thickness, Swine Production, 6,
57–59, https://doi.org/10.13257/j.cnki.21-1104/s.2015.06.020, 2015.
Li, Q. G., Tao, Z., Yang, Y. Z., Zhang, B., Shi, L. H., Ban, D. M., and Zhang,
H.: Research Progress of Long Chain Acyl-CoA Synthetase, China Animal
Husbandry & Veterinary Medicine, 39, 137–140,
https://doi.org/10.3969/j.issn.1671-7236.2012.06.034, 2012.
Marra, C. A. and de Alaniz, M. J.: Acyl-CoA synthetase activity in liver
microsomes from calcium-deficient rats, Lipids, 34, 343–354,
https://doi.org/10.1007/s11745-999-0372-x, 1999.
Meng, X. W.: The polymorphisms of IGF-I in Mongolian horse, Masteral
dissertation, Inner Mongolia Agricultural University, China, 49 pp., 2009.
Nei, M.: Sampling variances of heterozygosity and genetic distance,
Genetics, 76, 379–390, 1974.
Philipp, W., Karin, N., Christa, K., and Rosemarie, W.: Association of an ACSL1
gene variant with polyunsaturated fatty acids in bovine skeletal muscle, BMC
Genet., 12, 96, https://doi.org/10.1186/1471-2156-12-96, 2011.
Rodriguez, S., Gaunt, T. R., Dennison, E., Chen, X. H., Syddall, H. E.,
Phillips, D. I., Cooper, C., and Day, I. N.: Replication of IGF2-INS-TH*5
haplotype effect on obesity in older men and study of related phenotypes,
Eur. J. Hum. Genet., 14, 109–116, https://doi.org/10.1038/sj.ejhg.5201505,
2006.
Wang, S. M., Niu, X., Wang, J. F., and Ran, X. Q.: Methylation of −529 CpG Site
and Base Variation in IGF-I Promoter Associated with the Petite Phenotype of
Guizhou Pony, Chinese Journal of Biochemistry and Molecular Biology, 32, 432–439, https://doi.org/10.13865/j.cnki.cjbmb.2016.04.12, 2016.
Wu, M. L.: Regulating Mechanism Of miR-24-3p In Myoblasts Proliferation And
Apoptosis, Masteral dissertation, Northwest A&F University, China, 96 pp.,
2019.
Yong, Y. and He, L.: SHEsis, a powerful software platform for analyses of
linkage disequilibrium, haplotype construction, and genetic association at
polymorphism loci, Cell Res., 15, 97–98,
https://doi.org/10.1038/sj.cr.7290272, 2005.
Zhao, Z. D.: Transcriptional regulation of bovine ACSL1 gene, Doctoral
dissertation, Northwest A&F University, China, 93 pp., 2016.
Zhao, Z. D., Tian, H. S., Jiang, Y. Y., Shi, B. G., Liu, X., Li, X. P.,
Wang, D. Z., Chen, J. L., and Hu, J.: Polymorphisms of ACSL1 Gene Promoter and
Their Association Analysis with Milk Quality Traits in Yak (Bos grunniens),
Journal of Agricultural Biotechnology, 27, 1596–1603, 2019.
Short summary
The purpose of this study was to investigate the expression level and genetic variation of the ACSL1 gene of the Dezhou donkey and its effect on growth traits. The results show that the ACSL1 gene is regularly expressed in Dezhou donkey tissue. Through the association analysis of the genotype and haplotype combination and growth traits, it is speculated that the ACSL1 gene can be used as a candidate gene for Dezhou donkey breeding.
The purpose of this study was to investigate the expression level and genetic variation of the...