Ali, Q., Rashid, I., Shabbir, M. Z., Shahzad, K., Ashraf, K., Sargison, N. D.,
and Chaudhry, U.: Population genetics of benzimidazole-resistant Haemonchus
contortus and Haemonchus placei from buffalo and cattle: implications for
the emergence and spread of resistance mutations, Parasitol. Res.,
117, 3575–3583, https://doi.org/10.1007/s00436-018-6055-8, 2018.
Alves, J. M., Carneiro, M., Afonso, S., Lopes, S., Garreau, H., Boucher, S.,
Allian, D., Queney, G., Esteves, P. J., Bolet, J., and Ferrnand, N.: Levels
and patterns of genetic diversity and population structure in domestic
rabbits, PLoS One, 10, e0144687,
https://doi.org/10.1371/journal.pone.0144687, 2015.
Alves, J. M., Carneiroa, M., Day, J. P., Welch, J. J., Duckworthe, J. A., Cox,
T. E., Letnic, M., Strive, T., Ferranda, N., and Jiggins, F. M.: A single
introduction of wild rabbits triggered the biological invasion of Australia,
P. Natl. Acad. Sci. USA, 119, e2122734119,
https://doi.org/10.1073/pnas.2122734119, 2022.
Ballan, M., Bovo, S., Schiavo, G., Schiavitto, M., Negrini, R., and
Fontanesi, L.: Genomic diversity and signatures of selection in meat and
fancy rabbit breeds based on high-density marker data, Genet. Sel. Evol., 54, 1–18, https://doi.org/10.1186/s12711-022-00696-9, 2022.
Belkhir, K., Borsa, P., Chikhi, L., Raufaste, N., and Bonhomme, F.: GENETIX
4.05, logiciel sous Windows TM pour la génétique des populations,
Laboratoire Génome, Populations, Interactions, CNRS UMR 5000,
Université de Montpellier II, Montpellier, France,
http://www.genetix.univ-montp2.fr/genetix /genetix .htm (last access: 24 December 2022), 2004.
Ben Larabi, M., San-Cristobal, M., Chantry-Darmon, C., and Bolet, G.:
Genetic diversity of rabbit populations in Tunisia using microsatellites
markers, Proceedings of the 10th World Rabbit Congress, 3–6 September 2012,
Sharm El-Sheikh, Egypt, 31–35, 2012.
Ben Larabi, M., San-Cristobal, M., Chantry-Darmon, C., and Bolet G.:
Population structure in Tunisian indigenous rabbit as curtained using
molecular information, World Rabbit Sci., 22, 223–230,
https://doi.org/10.4995/wrs.2014.1468, 2014.
Berchiche, M., Cherfaoui, D., Lounaouci, G., and Kadi, S. A.: Utilisation de
lapins de population locale en élevage rationnel: Aperçu des
performances de reproduction et de croissance en Algérie, Proceedings of
the 3rd Franco-Maghrébin Congress of Zoology and Ichthyology, 6–10
November 2012 Marrakech, Morocco, 2012.
Bolet, G., Brun, J. M., Monnerot, M., Abeni, F., Arnal, C., Arnold, J., Bell,
D., Bergoglio, G., Besenfelder, U., Bosze, S., Boucher, S., Chanteloup, N.,
Ducourouble, M. C., Durand-Tardif, M., Esteves, P. J., Ferrand, N., Gautier,
A., Haas, C., Hewitt, G., Jehl, N., Joly, T., Koehl, P. F., Laube, T.,
Lechevestrier, S., Lopez, M., Masoero, G., Menigoz, J. J., Piccinin, R.,
Queney, G., Saleil, G., Surridge, A., Van Der Loo, W., Vicente, J. S., Viudes
De Castro, M. P., Virag, G., and Zimmermann, J. M.: Evaluation and
conservation of European rabbit (
Oryctolagus cuniculus) genetic resources, First results and
inferences, Proceedings of the 7th World Rabbit Congress, 4–7 July
2000, Valencia, Spain, 281–315, 2000.
Bortoluzzi, C., Crooijmans, R. P. M. A., Bosse, M., Hiemstra, S. J.,
Groenen, M. A. M., and Megens, H. J.: The effects of recent changes in
breeding preferences on maintaining traditional Dutch chicken genomic
diversity, Heredity, 121, 564–578,
https://doi.org/10.1038/s41437-018-0072-3, 2018.
Carneiro, M., Baird, S. J. E., Afonso, S., Ramirez, E., Tarroso, P., Teotonio,
H., Villafuerte, R., Nachman, M. W., and Ferrand, N.: Steep clines within a
highly permeable genome across a hybrid zone between two subspecies of the
European rabbit, Mol. Ecol., 22, 2511–2525,
https://doi.org/10.1111/mec.12272, 2013.
Dudu, A., Popa, G.-O., Ghiță, E., Pelmuș, R., Lazăr, C., Costache, M., and Georgescu, S. E.: Assessment of genetic diversity in main local sheep breeds from Romania using microsatellite markers, Arch. Anim. Breed., 63, 53–59, https://doi.org/10.5194/aab-63-53-2020, 2020.
El-Aksher, S. H., Sherif, H. S., Khalil, M. H., El-Garhy, H. A. S., and Ramadan,
S.: Comparative genetic analysis among Moshtohor line rabbits and their
parental lines using microsatellite markers, Proceedings of the 3rd
International Conference on Biotechnology Applications in Agriculture Benha
University, Moshtohor and Sharm El-Sheikh, 5–9 April 2016, Egypt, 9–24,
2016.
Emam, A. M., Afonso, S., Azoz, A., Mehaisen, G. M. K., Gonzalez, P., Ahmed, N.
A., and Ferrnand, N.: Microsatellite polymorphism in some Egyptian and
Spanish common rabbit breeds, Proceedings of the 11th World Rabbit
Congress, 15–18 June 2016, Qingdao, China, 31–34, 2016.
Emam, A. M., Azoz, A., Mehaisen, G. M. K., Ferrnand, N., and Ahmed, N. A.:
Diversity assessment among native middle Egypt rabbit populations in North
upper- Egypt province by microsatellite polymorphism, World Rabbit Sci., 25,
9–16, https://doi.org/10.4995/wrs.2017.5298, 2017.
Emam, A. M., Afonso, S., Gonzalez-Redondo, P., Mehaisen, G. M. K., Azoz, A. A. A.,
Ahmed, N. A., and Fernand, N.: Status and origin of Egyptian local rabbits in
comparison with Spanish common rabbits using mitochondrial DNA sequence
analysis, World Rabbit Sci., 28, 93–102,
https://doi.org/10.4995/wrs.2020.12219, 2020.
Evanno, G., Regnaut, S., and Goudet, J.: Detecting the number of clusters of
individuals using the software structure: A simulation study, Mol. Ecol.,
14, 2611–2620, https://doi.org/10.1111/j.1365-294X.2005.02553.x, 2005.
FAO.: Animal production and health guidelines (9), Molecular genetic
characterization of animal genetic resources, Commission on genetic
resources for food and agriculture, Food and Agriculture (FAO), Rome, Italy, https://doi.org/10.1017/S2078633611000609,
2011.
FAO.: The Second Report on the State of the World's Animal Genetic
Resources for Food and Agriculture, edited by: Scherf, B. D. and Pilling, D.,
FAO Commission on Genetic Resources for Food and Agriculture Assessments,
Rome, Italy, https://doi.org/10.4060/I4787E, 2015.
FAO: Biodiversity and the livestock sector – Guidelines for quantitative
assessment (Draft for public review), Livestock Environmental Assessment and
Performance (LEAP) Partnership, FAO, Rome, Italy, 2019.
FAO: FAO statistical data, Crops and livestock products,
https://www.fao.org/faostat/en/#data/QCL, Accessed december 2022 (last access: 20 December 2022), 2021.
Fouzia, B. K., Homrani, A., and Ammam, A.: Population structure and genetic
diversity using microsatellite markers of four Algerian rabbit populations
precludes hybridization with foreign breeds, South Asian J. Exp. Biol., 7,
191–200, 2017.
Frankham, R., Ballou, J., Briscoe, D., and McInnes, K.: Introduction to
Conservation Genetics, Cambridge: Cambridge University Press, UK,
https://doi.org/10.1017/CBO9780511808999, 2002.
Fuller, S. J., Wilson, J. C., and Mather P. B.: Patterns of differentiation
among wild rabbit populations Oryctolagus Cuniculus L. in arid and semiarid
ecosystems of North-Eastern Australia, Mol. Ecol., 6, 145–153,
https://doi.org/10.1046/j.1365-294X.1997.00167.x, 1997.
Gacem, M. and Lebas, F.: Rabbit husbandry in Algeria, Technical structure and
evaluation of performances, Proceedings of the 7th World Rabbit Congress,
4–7 July 2000 Valencia, Spain, vol. B, 75–80, 2000.
Hoban, S., Archer, F., Bertola, L., Bragg, J., Breed, M. F., Bruford, M. W.,
Coleman, M. A., Ekblom, R., Funk, W. C., Grueber, C. E., Hand, B. K.,
Jaffé, R., Jensen, E. L., Johnson, J., Kershaw, F., Liggins, L.,
MacDonald, A., Mergeay, J., Miller, J., Muller-Karger, F., O'Brien, D.,
Paz-Vinas, I., Potter, K. M., Razgour, O., Vernesi, C., and Hunter, M. E.:
Global genetic diversity status and trends: Towards a suite of Essential
Biodiversity Variables (EBVs) for genetic composition, Biol. Rev., 97,
1511–1538, https://doi.org/10.1111/brv.12852, 2022.
Holliday, J. A., Hallerman, E. M., and Haak, D. C.: Genotyping and sequencing
technologies in population genetics and genomics, in: Population Genomics,
edited by: Rajora, O. P., Springer, Cham,
https://doi.org/10.1007/13836_2017_5, 2018.
Iannella, A., Peacock, D., Cassey, P., and Schwensow, N.: Genetic perspectives
on the historical introduction of the European rabbit (Oryctolagus
cuniculus) to Australia, Biol. Invasions, 21, 603–614,
https://doi.org/10.1007/s10530-018-1849-2, 2019.
Jochová, M., Novák, K., Kott, T., Volek, Z., Majzlík, I., and
Tůmová, E.: Genetic characterization of Czech local rabbit breeds
using microsatellite analysis, Livest. Sci., 201, 41–49,
https://doi.org/10.1016/j.livsci.2017.03.025, 2017.
Kalinowski, S. T., Taper, M. L., and Marshall, T. C.: Revising how the computer
program CERVUS accommodates genotyping error increases success in paternity
assignment, Mol. Ecol., 16, 1099–1106,
https://doi.org/10.1111/j.1365-294X.2007.03089.x, 2007.
Karsli, B. A., Demir, E., Fidan, H. G., and Karsli, T.: Assessment of genetic diversity and differentiation among four indigenous Turkish sheep breeds using microsatellites, Arch. Anim. Breed., 63, 165–172, https://doi.org/10.5194/aab-63-165-2020, 2020.
Kettenring, K. M., Mercer, K. L., Adams, C. R., and Hines, J.: Application
of genetic diversity-ecosystem function research to ecological restoration,
J. Appl. Ecol., 51, 339–348, https://doi.org/10.1111/1365-2664.12202, 2014.
Lai, F. Y., Ding, S. T., Tu, P. A., Chen, R. S., Lin, D. Y., Lin, E. C., and Wang, P. H.:
Population structure and phylogenetic analysis of laboratory rabbits in
Taiwan based on microsatellite markers, World Rabbit Sci., 26, 57–70,
https://doi.org/10.4995/wrs.2018.7362, 2018.
Ma, Q., Wu, B., Jiang, J., and Song, Z.: Genetic Characterization of
Selected Domestic Populations of Channel Catfish (Ictalurus punctatus) using
Microsatellites, Pakistan J. Zool., 52, 1683–1689,
2020.
Mogharbi, A., Mediouni, M. R., Ameur Ameur, A., Azzi, N., an dGaouar, S. B. S.:
Morphometric characterization of domestic rabbits (
Oryctolagus cuniculus domesticus L.) in western Algeria,
Genet. Biodiv. J, 5, 72–97, 2021.
Pavlova, A., Beheregaray, L. B., Coleman, R., Gilligan, D., Harrisson, K. A.,
Ingram, B. A., Kearns, J., Lamb, A. M., Lintermans, M., Lyon, J., Nguyen,
T. T. T., Sasaki, M., Tonkin, Z., Yen, J. D. L., and Sunnucks, P.: Severe
consequences of habitat fragmentation on genetic diversity of an endangered
Australian freshwater fish: a call for assisted gene flow, Evol. Appl., 10,
531–550, https://doi.org/10.1111/eva.12484, 2017.
Peakall, R. and Smouse, P. E.: GenAlEx6.5: genetic analysis in Excel,
Population genetic software for teaching and research – an update,
Bioinformatics, 28, 2537–2539,
https://doi.org/10.1093/bioinformatics/bts460, 2012.
R Development Core Team: R: A Language and Environment for Statistical
Computing, R Foundation for Statistical Computing, Vienna, Austria, ISBN
3-900051-07-0, 2008.
Sastry, N. S. R.: The Indian Situation of Livestock Farming & Planetary
Boundaries, Indian J. Anim. Prod. Manage., 37, 69–87,
https://doi.org/10.48165/ijapm.2023.37.2.1, 2023.
Schmidt, T. L., Jasper, M., Weeks, A. R., and Hoffmann, A. A.: Unbiased
population heterozygosity estimates from genome-wide sequence data, Methods
Ecol Evol., 12, 1888–1898, https://doi.org/10.1111/2041-210X.13659, 2021.
Shevchenko, Y. and Kopylov, K.: Genotyping of New Zealand White Rabbits by
PCR-RFLP Markers, Agricultural Science and Practice, 2, 21–25,
https://doi.org/10.15407/agrisp2.02.021, 2015.
Sigsgaard, E. E., Jensen, M. R., Winkelmann, I. E., Møller, P. R., Hansen,
M. M., and Thomsen, P. F.: Population-level inferences from environmental
DNA – Current status and future perspectives, Evol Appl., 13, 245–262,
https://doi.org/10.1111/eva.12882, 2020.
Teixeira, J. C. and Huber, C. D.: The inflated significance of neutral
genetic diversity in conservation genetics, P. Natl. Acad. Sci., 118,
e2015096118, https://doi.org/10.1073/pnas.2015096118, 2021.
Woldvogel, A. M. and Pfenninger, M.: Temperature dependence of spontaneous
mutation rates, Cold Spring Harbor Laboratory Press, 31, 1582–1589,
https://doi.org/10.1101/gr.275168.120, 2021.
Xia, Q., Wang, X., Pan, Z., Zhang, R., Wei, C., Chu, M., and Di, R.: Genetic diversity and phylogenetic relationship of nine sheep populations based on microsatellite markers, Arch. Anim. Breed., 64, 7–16, https://doi.org/10.5194/aab-64-7-2021, 2021.
Zeroual, A., Assani, A. A., Meddi, H., Bouabdelli, S., Zeroual, S., and
Alkama, R.: Assessment of Projected Precipitations and Temperatures Change
Signals over Algeria Based on Regional Climate Model: RCA4 Simulations, in:
Water Resources in Algeria – Part I: Assessment of Surface and Groundwater
Resources, Hdb Env Chem (97), edited by: Negm, A. M., Bouderbala, A.,
Chenchouni, H., and Barceló, D., Springer, Cham, 135–159,
https://doi.org/10.1007/698_2020_526, 2020.
Zerrouki, N., Bolet, G., Berchiche, M., and Lebas, F.: Evaluation of breeding
performance of a local Algerian rabbit population raised in the Tizi-Ouzou
area (Kabylia), World Rabbit Sci., 13, 29–37,
https://doi.org/10.4995/wrs.2005.531, 2005.